Weisrock, D., Harmon, L., & Larson, A. (2005). Resolving deep phylogenetic relationships in salamanders: analyses of mitochondrial and nuclear genomic data. Systematic Biology, 54(5), 758-77. https://doi.org/10.1080/10635150500234641

Weisrock, D., Smith, S., Chan, L., Biebouw, K., Kappeler, P., & Yoder, A. (2012). Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Molecular Biology and Evolution, 29(6), 1615-30. https://doi.org/10.1093/molbev/mss008

Weisrock, D., Kozak, K., & Larson, A. (2005). Phylogeographic analysis of mitochondrial gene flow and introgression in the salamander, Plethodon shermani. Molecular Ecology, 14(5), 1457-72. https://doi.org/10.1111/j.1365-294X.2005.02524.x

Samuels, A., Weisrock, D., Smith, J., France, K., Walker, J., Putta, S., & . (2005). Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes. Gene, 349, 43-53. https://doi.org/10.1016/j.gene.2004.12.037 (Original work published 2005)

Putta, S., Smith, J., Walker, J., Rondet, M., Weisrock, D., … Monaghan, J. (2004). From biomedicine to natural history research: EST resources for ambystomatid salamanders. BMC Genomics, 5(1), 54. https://doi.org/10.1186/1471-2164-5-54 (Original work published 2004)

Weisrock, D., , Ugurtas, I., Larson, A., & Papenfuss, T. (2001). Molecular phylogenetics and historical biogeography among salamandrids of the "true" salamander clade: rapid branching of numerous highly divergent lineages in Mertensiella luschani associated with the rise of Anatolia. Molecular Phylogenetics and Evolution, 18(3), 434-48. https://doi.org/10.1006/mpev.2000.0905

Weisrock, D., & Janzen, F. (2000). Comparative molecular phylogeography of North American softshell turtles (Apalone): implications for regional and wide-scale historical evolutionary forces. Molecular Phylogenetics and Evolution, 14(1), 152-64. https://doi.org/10.1006/mpev.1999.0689

Weisrock, D. (2012). Concordance analysis in mitogenomic phylogenetics. Molecular Phylogenetics and Evolution, 65(1), 194-202. https://doi.org/10.1016/j.ympev.2012.06.003

Haws, D., Huggins, P., O’Neill, E., Weisrock, D., & Yoshida, R. (2012). A support vector machine based test for incongruence between sets of trees in tree space. BMC Bioinformatics, 13, 210. https://doi.org/10.1186/1471-2105-13-210 (Original work published 2012)

Kajita, Y., O’Neill, E., Zheng, Y., Obrycki, J., & Weisrock, D. (2012). A population genetic signature of human releases in an invasive ladybeetle. Molecular Ecology, 21(22), 5473-83. https://doi.org/10.1111/mec.12059